Files for the integrated pan-disease CD8+ T cell atlas (Xue et al. (2024) Integrative mapping of human CD8+ T cells in inflammation and cancer, Nature Methods. https://doi.org/10.1038/s41592-024-02530-0):
Files for the integrated population level TCRαβ atlas:
The gene expression count matrix are stored in H5AD format, which can be accessed by Scanpy's read_h5ad
The immune receptor sequences are stored in JSON format, which can be accessed by ScirPy's read_10x_vdj
Sample ID |
Receptor Type |
Gene expression count (H5AD) |
Receptor sequence (JSON) |
|---|