Sample Information

Basic information

Sample name UPN19_pre

HLA information

Downloading datasets

The gene expression count matrix are stored in H5AD format, which can be accessed by Scanpy's read_h5ad

The immune receptor sequences are stored in JSON format, which can be accessed by ScirPy's read_10x_vdj

Report an issue

You are welcome to provide feedbacks or report issues about the datasets and the front-end experiences.


Contact us

You may also want to contact us via email: wanluliu@intl.zju.edu.cn; ziwei.21@intl.zju.edu.cn; wu_lize@zju.edu.cn

Transcriptome Module
Gene
Cluster cell by
Cell subtype annotation
Selected cell type
Relative expression
tSNE plot of gene expression
tSNE plot of predicted cell type
Violin plot of gene expression
Bar plot of cell subtype number
Marker gene heatmap
Correlation heatmap
Differentially expressed genes
- Using
  •  ● |Fold change| ≥ 4 & FDR ≤ 0.05
  •  ● FDR ≤ 0.05
  •  ● Non-DEG
Clonotype Module
Clonotype network plot
Loading this plot could be slow in this sample
VDJ gene usage
Bar plot of clonotype cluster
Bar plot of cell type in each clonotype
VαVβ gene pairing
V/J gene pairing/joining
VDJ metadata
Show unique clonotype
Mailing address
A314, ZJU-UoE Institute,
718 East Haizhou Rd.,
Haining, Zhejiang 314400,
P.R. China


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